Yes I have tried your batch conversion script but the CMD just took me back to the jnx2img folder without running:
Microsoft Windows [Version 10.0.17134.648]
(c) 2018 Microsoft Corporation. All rights reserved.
C:\>cd\jnx2img
C:\jnx2img>batch_convert.cmd "c:\maps-jnx" "c:\Maps-img"
C:\jnx2img>for %i in ("c:\*.jnx") do call jnx2img.cmd "%i" "c:\%~ni.img"
C:\jnx2img>
Also, when I created the three IMGs which had the same MAPIDs, I did run the jnx2img.cmd three times in succession.